J4_6N8K_010
3D structure
- PDB id
- 6N8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 6N8K|1|1|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6N8K_010 not in the Motif Atlas
- Homologous match to J4_8CRE_008
- Geometric discrepancy: 0.136
- The information below is about J4_8CRE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6N8K|1|1|C|2654
6N8K|1|1|U|2655
6N8K|1|1|A|2656
6N8K|1|1|A|2657
6N8K|1|1|G|2658
*
6N8K|1|1|U|2712
6N8K|1|1|U|2713
6N8K|1|1|G|2714
6N8K|1|1|A|2715
6N8K|1|1|U|2716
*
6N8K|1|1|A|2740
6N8K|1|1|C|2741
6N8K|1|1|C|2742
*
6N8K|1|1|G|2751
6N8K|1|1|U|2752
6N8K|1|1|G|2753
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain o
- 60S ribosomal protein L29
- Chain q
- 60S ribosomal protein L42-A
- Chain v
- 60S ribosomal export protein NMD3
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