J4_6N8L_007
3D structure
- PDB id
- 6N8L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6N8L|1|1|U|2269, 6N8L|1|1|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6N8L_007 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.4203
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
6N8L|1|1|C|2192
6N8L|1|1|U|2193
6N8L|1|1|G|2194
*
6N8L|1|1|C|2248
6N8L|1|1|G|2249
*
6N8L|1|1|C|2267
6N8L|1|1|U|2268
6N8L|1|1|U|2269
6N8L|1|1|A|2270
6N8L|1|1|A|2271
6N8L|1|1|G|2272
6N8L|1|1|G|2273
6N8L|1|1|U|2274
6N8L|1|1|A|2275
6N8L|1|1|G|2276
*
6N8L|1|1|U|2310
6N8L|1|1|G|2311
6N8L|1|1|A|2312
6N8L|1|1|A|2313
6N8L|1|1|U|2314
6N8L|1|1|G|2315
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain v
- 60S ribosomal export protein NMD3
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