J4_6N9E_018

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6N9E|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6N9E_018 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.103

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6N9E|1|2A|G|1310
6N9E|1|2A|G|1311
6N9E|1|2A|U|1312
6N9E|1|2A|U|1313
6N9E|1|2A|C|1314
*
6N9E|1|2A|G|1338
6N9E|1|2A|G|1339
6N9E|1|2A|U|1340
6N9E|1|2A|U|1341
6N9E|1|2A|A|1342
6N9E|1|2A|G|1343
*
6N9E|1|2A|C|1404
6N9E|1|2A|U|1405
*
6N9E|1|2A|A|1597
6N9E|1|2A|C|1598
6N9E|1|2A|C|1599
6N9E|1|2A|C|1600
6N9E|1|2A|G|1601
6N9E|1|2A|U|1602
6N9E|1|2A|A|1603
6N9E|1|2A|C|1604

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S Ribosomal Protein L23