J4_6N9F_001

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6N9F|1|1A|U|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6N9F_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0964

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6N9F|1|1A|C|257
6N9F|1|1A|U|258
*
6N9F|1|1A|G|397
6N9F|1|1A|A|398
6N9F|1|1A|G|399
6N9F|1|1A|U|400
6N9F|1|1A|A|401
6N9F|1|1A|C|402
*
6N9F|1|1A|G|426
6N9F|1|1A|G|427
6N9F|1|1A|A|428
6N9F|1|1A|A|429
6N9F|1|1A|U|430
6N9F|1|1A|C|431
6N9F|1|1A|U|432
6N9F|1|1A|G|433
*
6N9F|1|1A|U|448
6N9F|1|1A|A|449
6N9F|1|1A|A|450
6N9F|1|1A|G|451

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S Ribosomal Protein L9