J4_6ND5_031
3D structure
- PDB id
- 6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6ND5|1|2x|4SU|8, 6ND5|1|2x|U|47, 6ND5|1|2x|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ND5_031 not in the Motif Atlas
- Homologous match to J4_4WT8_034
- Geometric discrepancy: 0.1958
- The information below is about J4_4WT8_034
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6ND5|1|2x|G|7
6ND5|1|2x|4SU|8
6ND5|1|2x|G|9
6ND5|1|2x|G|10
*
6ND5|1|2x|C|25
6ND5|1|2x|G|26
6ND5|1|2x|U|27
*
6ND5|1|2x|A|43
6ND5|1|2x|A|44
6ND5|1|2x|G|45
6ND5|1|2x|G|46
6ND5|1|2x|U|47
6ND5|1|2x|C|48
6ND5|1|2x|G|49
*
6ND5|1|2x|C|65
6ND5|1|2x|C|66
Current chains
- Chain 2x
- P-site tRNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2Q
- 50S ribosomal protein L16
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2m
- 30S ribosomal protein S13
- Chain 2w
- Transfer RNA; tRNA
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