J4_6ND6_001

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6ND6|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ND6_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.065

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6ND6|1|1A|C|268
6ND6|1|1A|U|269
*
6ND6|1|1A|G|370
6ND6|1|1A|A|371
6ND6|1|1A|G|372
6ND6|1|1A|U|373
6ND6|1|1A|A|374
6ND6|1|1A|C|375
*
6ND6|1|1A|G|399
6ND6|1|1A|G|400
6ND6|1|1A|A|401
6ND6|1|1A|A|402
6ND6|1|1A|U|403
6ND6|1|1A|C|404
6ND6|1|1A|U|405
6ND6|1|1A|G|406
*
6ND6|1|1A|U|421
6ND6|1|1A|A|422
6ND6|1|1A|A|423
6ND6|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9