J4_6ND6_026

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6ND6|1|2a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ND6_026 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0861

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6ND6|1|2a|G|115
6ND6|1|2a|A|116
6ND6|1|2a|G|117
6ND6|1|2a|U|118
6ND6|1|2a|A|119
6ND6|1|2a|A|120
6ND6|1|2a|C|121
6ND6|1|2a|G|122
*
6ND6|1|2a|U|239
6ND6|1|2a|C|240
*
6ND6|1|2a|G|286
6ND6|1|2a|U|287
6ND6|1|2a|A|288
6ND6|1|2a|G|289
*
6ND6|1|2a|C|311
6ND6|1|2a|C|312

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17