J4_6NDK_001

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6NDK|1|QA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6NDK_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.1254

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6NDK|1|QA|G|115
6NDK|1|QA|A|116
6NDK|1|QA|G|117
6NDK|1|QA|U|118
6NDK|1|QA|A|119
6NDK|1|QA|A|120
6NDK|1|QA|C|121
6NDK|1|QA|G|122
*
6NDK|1|QA|U|239
6NDK|1|QA|C|240
*
6NDK|1|QA|G|286
6NDK|1|QA|U|287
6NDK|1|QA|A|288
6NDK|1|QA|G|289
*
6NDK|1|QA|C|311
6NDK|1|QA|C|312

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain QQ

30S ribosomal protein S17