J4_6NDK_006

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6NDK_006 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1294

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6NDK|1|RA|C|297
6NDK|1|RA|G|298
6NDK|1|RA|A|299
6NDK|1|RA|A|300
6NDK|1|RA|G|301
*
6NDK|1|RA|C|316
6NDK|1|RA|G|317
6NDK|1|RA|C|318
6NDK|1|RA|C|319
*
6NDK|1|RA|G|323
6NDK|1|RA|A|324
6NDK|1|RA|G|325
*
6NDK|1|RA|C|337
6NDK|1|RA|G|338
6NDK|1|RA|U|339
6NDK|1|RA|A|340
6NDK|1|RA|G|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24