3D structure

PDB id
6NDK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ASLSufA6 A37.5 bound to the 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.64 Å

Loop

Sequence
GGUUC*GGUUAG*CU*ACCCGUAC
Length
21 nucleotides
Bulged bases
6NDK|1|YA|U|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6NDK_030 not in the Motif Atlas
Homologous match to J4_9DFE_004
Geometric discrepancy: 0.1114
The information below is about J4_9DFE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6NDK|1|YA|G|1310
6NDK|1|YA|G|1311
6NDK|1|YA|U|1312
6NDK|1|YA|U|1313
6NDK|1|YA|C|1314
*
6NDK|1|YA|G|1338
6NDK|1|YA|G|1339
6NDK|1|YA|U|1340
6NDK|1|YA|U|1341
6NDK|1|YA|A|1342
6NDK|1|YA|G|1343
*
6NDK|1|YA|C|1404
6NDK|1|YA|U|1405
*
6NDK|1|YA|A|1597
6NDK|1|YA|C|1598
6NDK|1|YA|C|1599
6NDK|1|YA|C|1600
6NDK|1|YA|G|1601
6NDK|1|YA|U|1602
6NDK|1|YA|A|1603
6NDK|1|YA|C|1604

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y7
50S ribosomal protein L34
Chain YX
50S ribosomal protein L23

Coloring options:


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