J4_6NSH_008

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

6NSH|1|RA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6NSH_008 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.078

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6NSH|1|RA|U|1313
6NSH|1|RA|C|1314
*
6NSH|1|RA|G|1338
6NSH|1|RA|G|1339
6NSH|1|RA|U|1340
6NSH|1|RA|U|1341
6NSH|1|RA|A|1342
6NSH|1|RA|G|1343
*
6NSH|1|RA|C|1404
6NSH|1|RA|U|1405
*
6NSH|1|RA|A|1597
6NSH|1|RA|C|1598
6NSH|1|RA|C|1599
6NSH|1|RA|C|1600
6NSH|1|RA|G|1601
6NSH|1|RA|U|1602
6NSH|1|RA|A|1603

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23