J4_6NTA_014

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6NTA|1|XA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6NTA_014 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0745

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6NTA|1|XA|G|115
6NTA|1|XA|A|116
6NTA|1|XA|G|117
6NTA|1|XA|U|118
6NTA|1|XA|A|119
6NTA|1|XA|A|120
6NTA|1|XA|C|121
6NTA|1|XA|G|122
*
6NTA|1|XA|U|239
6NTA|1|XA|C|240
*
6NTA|1|XA|G|286
6NTA|1|XA|U|287
6NTA|1|XA|A|288
6NTA|1|XA|G|289
*
6NTA|1|XA|C|311
6NTA|1|XA|C|312

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XP

30S ribosomal protein S16

Chain XQ

30S ribosomal protein S17