J4_6NUO_021

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

6NUO|1|YA|G|1317, 6NUO|1|YA|A|1318, 6NUO|1|YA|U|1319, 6NUO|1|YA|A|1321, 6NUO|1|YA|G|1694

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6NUO_021 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0854

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6NUO|1|YA|C|1316
6NUO|1|YA|G|1317
6NUO|1|YA|A|1318
6NUO|1|YA|U|1319
6NUO|1|YA|A|1320
6NUO|1|YA|A|1321
6NUO|1|YA|A|1322
*
6NUO|1|YA|U|1340
6NUO|1|YA|C|1341
*
6NUO|1|YA|G|1692
6NUO|1|YA|C|1693
6NUO|1|YA|G|1694
6NUO|1|YA|C|1695
*
6NUO|1|YA|G|2031
6NUO|1|YA|G|2032

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y5

50S ribosomal protein L32

Chain YR

50S ribosomal protein L17

Chain YW

50S ribosomal protein L22