J4_6NY6_004
3D structure
- PDB id
- 6NY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GAGUAACG*UC*GUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6NY6|1|A|C|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6NY6_004 not in the Motif Atlas
- Homologous match to J4_4LFB_001
- Geometric discrepancy: 0.1003
- The information below is about J4_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_90044.1
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6NY6|1|A|G|115
6NY6|1|A|A|116
6NY6|1|A|G|117
6NY6|1|A|U|118
6NY6|1|A|A|119
6NY6|1|A|A|120
6NY6|1|A|C|121
6NY6|1|A|G|122
*
6NY6|1|A|U|239
6NY6|1|A|C|240
*
6NY6|1|A|G|286
6NY6|1|A|U|287
6NY6|1|A|A|288
6NY6|1|A|G|289
*
6NY6|1|A|C|311
6NY6|1|A|C|312
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain P
- 30S ribosomal protein S16
- Chain Q
- 30S ribosomal protein S17
Coloring options: