J4_6O3M_006

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O3M_006 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.0883

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6O3M|1|RA|C|297
6O3M|1|RA|G|298
6O3M|1|RA|A|299
6O3M|1|RA|A|300
6O3M|1|RA|G|301
*
6O3M|1|RA|C|316
6O3M|1|RA|G|317
6O3M|1|RA|C|318
6O3M|1|RA|C|319
*
6O3M|1|RA|G|323
6O3M|1|RA|A|324
6O3M|1|RA|G|325
*
6O3M|1|RA|C|337
6O3M|1|RA|G|338
6O3M|1|RA|U|339
6O3M|1|RA|A|340
6O3M|1|RA|G|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24