J4_6O3M_015

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6O3M|1|XA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O3M_015 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0743

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6O3M|1|XA|G|115
6O3M|1|XA|A|116
6O3M|1|XA|G|117
6O3M|1|XA|U|118
6O3M|1|XA|A|119
6O3M|1|XA|A|120
6O3M|1|XA|C|121
6O3M|1|XA|G|122
*
6O3M|1|XA|U|239
6O3M|1|XA|C|240
*
6O3M|1|XA|G|286
6O3M|1|XA|U|287
6O3M|1|XA|A|288
6O3M|1|XA|G|289
*
6O3M|1|XA|C|311
6O3M|1|XA|C|312

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XP

30S ribosomal protein S16

Chain XQ

30S ribosomal protein S17