J4_6O3M_018
3D structure
- PDB id
- 6O3M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.97 Å
Loop
- Sequence
- UUGG*CAC*GGGGUCGGA*UCUA
- Length
- 20 nucleotides
- Bulged bases
- 6O3M|1|XV|U|8, 6O3M|1|XV|U|48, 6O3M|1|XV|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6O3M_018 not in the Motif Atlas
- Homologous match to J4_7U2I_014
- Geometric discrepancy: 0.3122
- The information below is about J4_7U2I_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47701.1
- Basepair signature
- cWW-F-F-cWW-F-cWW-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6O3M|1|XV|U|7
6O3M|1|XV|U|8
6O3M|1|XV|G|9
6O3M|1|XV|G|10
*
6O3M|1|XV|C|26
6O3M|1|XV|A|27
6O3M|1|XV|C|28
*
6O3M|1|XV|G|44
6O3M|1|XV|G|45
6O3M|1|XV|G|46
6O3M|1|XV|G|47
6O3M|1|XV|U|48
6O3M|1|XV|C|49
6O3M|1|XV|G|50
6O3M|1|XV|G|51
6O3M|1|XV|A|52
*
6O3M|1|XV|U|64
6O3M|1|XV|C|65
6O3M|1|XV|U|66
6O3M|1|XV|A|67
Current chains
- Chain XV
- P-site ASLPro
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XM
- 30S ribosomal protein S13
- Chain Y0
- 50S ribosomal protein L27
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
- Chain YQ
- 50S ribosomal protein L16
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