3D structure

PDB id
6O3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.97 Å

Loop

Sequence
GGUUC*GGUUAG*CU*ACCCGUAC
Length
21 nucleotides
Bulged bases
6O3M|1|YA|U|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6O3M_022 not in the Motif Atlas
Homologous match to J4_9DFE_004
Geometric discrepancy: 0.0835
The information below is about J4_9DFE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6O3M|1|YA|G|1310
6O3M|1|YA|G|1311
6O3M|1|YA|U|1312
6O3M|1|YA|U|1313
6O3M|1|YA|C|1314
*
6O3M|1|YA|G|1338
6O3M|1|YA|G|1339
6O3M|1|YA|U|1340
6O3M|1|YA|U|1341
6O3M|1|YA|A|1342
6O3M|1|YA|G|1343
*
6O3M|1|YA|C|1404
6O3M|1|YA|U|1405
*
6O3M|1|YA|A|1597
6O3M|1|YA|C|1598
6O3M|1|YA|C|1599
6O3M|1|YA|C|1600
6O3M|1|YA|G|1601
6O3M|1|YA|U|1602
6O3M|1|YA|A|1603
6O3M|1|YA|C|1604

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y7
50S ribosomal protein L34
Chain YX
50S ribosomal protein L23

Coloring options:


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