3D structure

PDB id
6O3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.97 Å

Loop

Sequence
GGGC*GAC*GGAAG*CGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6O3M_027 not in the Motif Atlas
Homologous match to J4_9DFE_010
Geometric discrepancy: 0.1033
The information below is about J4_9DFE_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_77044.4
Basepair signature
cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

6O3M|1|YA|G|2643
6O3M|1|YA|G|2644
6O3M|1|YA|G|2645
6O3M|1|YA|C|2646
*
6O3M|1|YA|G|2674
6O3M|1|YA|A|2675
6O3M|1|YA|C|2676
*
6O3M|1|YA|G|2731
6O3M|1|YA|G|2732
6O3M|1|YA|A|2733
6O3M|1|YA|A|2734
6O3M|1|YA|G|2735
*
6O3M|1|YA|C|2769
6O3M|1|YA|G|2770
6O3M|1|YA|C|2771

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YE
50S ribosomal protein L3
Chain YN
50S ribosomal protein L13
Chain YO
50S ribosomal protein L14

Coloring options:


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