J4_6O3M_029
3D structure
- PDB id
- 6O3M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.97 Å
Loop
- Sequence
- UUGG*CAC*GGGGUCG*UA
- Length
- 16 nucleotides
- Bulged bases
- 6O3M|1|XV|U|8, 6O3M|1|XV|U|48, 6O3M|1|XV|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6O3M_029 not in the Motif Atlas
- Homologous match to J4_4TUE_004
- Geometric discrepancy: 0.133
- The information below is about J4_4TUE_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6O3M|1|XV|U|7
6O3M|1|XV|U|8
6O3M|1|XV|G|9
6O3M|1|XV|G|10
*
6O3M|1|XV|C|26
6O3M|1|XV|A|27
6O3M|1|XV|C|28
*
6O3M|1|XV|G|44
6O3M|1|XV|G|45
6O3M|1|XV|G|46
6O3M|1|XV|G|47
6O3M|1|XV|U|48
6O3M|1|XV|C|49
6O3M|1|XV|G|50
*
6O3M|1|XV|U|66
6O3M|1|XV|A|67
Current chains
- Chain XV
- P-site ASLPro
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XM
- 30S ribosomal protein S13
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
- Chain YQ
- 50S ribosomal protein L16
Coloring options: