J4_6O7K_001

3D structure

PDB id

6O7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6O7K|1|g|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O7K_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.249

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6O7K|1|g|G|115
6O7K|1|g|A|116
6O7K|1|g|G|117
6O7K|1|g|U|118
6O7K|1|g|A|119
6O7K|1|g|A|120
6O7K|1|g|U|121
6O7K|1|g|G|122
*
6O7K|1|g|U|239
6O7K|1|g|G|240
*
6O7K|1|g|C|286
6O7K|1|g|U|287
6O7K|1|g|A|288
6O7K|1|g|G|289
*
6O7K|1|g|C|311
6O7K|1|g|C|312

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S17

Chain y

30S ribosomal protein S16