J4_6O7K_002

3D structure

PDB id

6O7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6O7K|1|g|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O7K_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1101

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6O7K|1|g|G|142
6O7K|1|g|A|143
6O7K|1|g|G|144
*
6O7K|1|g|C|178
6O7K|1|g|A|179
6O7K|1|g|U|180
6O7K|1|g|A|181
6O7K|1|g|A|182
6O7K|1|g|C|183
6O7K|1|g|G|184
*
6O7K|1|g|C|193
6O7K|1|g|C|194
6O7K|1|g|A|195
6O7K|1|g|A|196
6O7K|1|g|A|197
6O7K|1|g|G|198
*
6O7K|1|g|U|219
6O7K|1|g|G|220
6O7K|1|g|C|221

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 3

30S ribosomal protein S20