J4_6O8W_003

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

CGAG*CGCAG*CGAGU*GCGAAUGAG

Length

23 nucleotides

Bulged bases

6O8W|1|A|U|693, 6O8W|1|A|G|694

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O8W_003 not in the Motif Atlas

Homologous match to J4_4WF9_003

Geometric discrepancy: 0.2111

The information below is about J4_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69347.1

Basepair signature

cWW-F-F-F-F-cWW-F-F-F-cWW-F-F-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6O8W|1|A|C|638
6O8W|1|A|G|639
6O8W|1|A|A|640
6O8W|1|A|G|641
*
6O8W|1|A|C|663
6O8W|1|A|G|664
6O8W|1|A|C|665
6O8W|1|A|A|666
6O8W|1|A|G|667
*
6O8W|1|A|C|674
6O8W|1|A|G|675
6O8W|1|A|A|676
6O8W|1|A|G|677
6O8W|1|A|U|678
*
6O8W|1|A|G|688
6O8W|1|A|C|689
6O8W|1|A|G|690
6O8W|1|A|A|691
6O8W|1|A|A|692
6O8W|1|A|U|693
6O8W|1|A|G|694
6O8W|1|A|A|695
6O8W|1|A|G|696

Current chains

Chain A

50S subunit

Nearby chains

Chain 5

50S ribosomal protein L35

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15