J4_6O8W_011

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GAGC*GAC*GGAAG*CAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O8W_011 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.2148

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6O8W|1|A|G|2657
6O8W|1|A|A|2658
6O8W|1|A|G|2659
6O8W|1|A|C|2660
*
6O8W|1|A|G|2688
6O8W|1|A|A|2689
6O8W|1|A|C|2690
*
6O8W|1|A|G|2745
6O8W|1|A|G|2746
6O8W|1|A|A|2747
6O8W|1|A|A|2748
6O8W|1|A|G|2749
*
6O8W|1|A|C|2783
6O8W|1|A|A|2784
6O8W|1|A|C|2785

Current chains

Chain A

50S subunit

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L13

Chain L

50S ribosomal protein L14