J4_6O8X_002

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

UGAAG*CGCU*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O8X_002 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1544

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

6O8X|1|A|U|334
6O8X|1|A|G|335
6O8X|1|A|A|336
6O8X|1|A|A|337
6O8X|1|A|G|338
*
6O8X|1|A|C|353
6O8X|1|A|G|354
6O8X|1|A|C|355
6O8X|1|A|U|356
*
6O8X|1|A|G|360
6O8X|1|A|A|361
6O8X|1|A|G|362
*
6O8X|1|A|C|374
6O8X|1|A|G|375
6O8X|1|A|U|376
6O8X|1|A|A|377
6O8X|1|A|G|378

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24