J4_6O8Z_010
3D structure
- PDB id
- 6O8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GAGC*GAC*GGAAG*CAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6O8Z_010 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.2254
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6O8Z|1|A|G|2657
6O8Z|1|A|A|2658
6O8Z|1|A|G|2659
6O8Z|1|A|C|2660
*
6O8Z|1|A|G|2688
6O8Z|1|A|A|2689
6O8Z|1|A|C|2690
*
6O8Z|1|A|G|2745
6O8Z|1|A|G|2746
6O8Z|1|A|A|2747
6O8Z|1|A|A|2748
6O8Z|1|A|G|2749
*
6O8Z|1|A|C|2783
6O8Z|1|A|A|2784
6O8Z|1|A|C|2785
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L13
- Chain L
- 50S ribosomal protein L14
Coloring options: