J4_6O90_004

3D structure

PDB id

6O90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGAAAG*CC*GAGC*GG

Length

14 nucleotides

Bulged bases

6O90|1|A|G|1308, 6O90|1|A|A|1309, 6O90|1|A|A|1310, 6O90|1|A|A|1311, 6O90|1|A|A|1689, 6O90|1|A|G|1690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O90_004 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.2867

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6O90|1|A|C|1307
6O90|1|A|G|1308
6O90|1|A|A|1309
6O90|1|A|A|1310
6O90|1|A|A|1311
6O90|1|A|G|1312
*
6O90|1|A|C|1330
6O90|1|A|C|1331
*
6O90|1|A|G|1688
6O90|1|A|A|1689
6O90|1|A|G|1690
6O90|1|A|C|1691
*
6O90|1|A|G|2023
6O90|1|A|G|2024

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L32

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22