J4_6O97_001

3D structure

PDB id

6O97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6O97|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O97_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0609

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6O97|1|1A|C|268
6O97|1|1A|U|269
*
6O97|1|1A|G|370
6O97|1|1A|A|371
6O97|1|1A|G|372
6O97|1|1A|U|373
6O97|1|1A|A|374
6O97|1|1A|C|375
*
6O97|1|1A|G|399
6O97|1|1A|G|400
6O97|1|1A|A|401
6O97|1|1A|A|402
6O97|1|1A|U|403
6O97|1|1A|C|404
6O97|1|1A|U|405
6O97|1|1A|G|406
*
6O97|1|1A|U|421
6O97|1|1A|A|422
6O97|1|1A|A|423
6O97|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9