3D structure

PDB id
6O97 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.75 Å

Loop

Sequence
GAGUAACG*UC*GUAG*CC
Length
16 nucleotides
Bulged bases
6O97|1|2a|C|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6O97_027 not in the Motif Atlas
Homologous match to J4_4LFB_001
Geometric discrepancy: 0.0816
The information below is about J4_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6O97|1|2a|G|115
6O97|1|2a|A|116
6O97|1|2a|G|117
6O97|1|2a|U|118
6O97|1|2a|A|119
6O97|1|2a|A|120
6O97|1|2a|C|121
6O97|1|2a|G|122
*
6O97|1|2a|U|239
6O97|1|2a|C|240
*
6O97|1|2a|G|286
6O97|1|2a|U|287
6O97|1|2a|A|288
6O97|1|2a|G|289
*
6O97|1|2a|C|311
6O97|1|2a|C|312

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2p
30S ribosomal protein S16
Chain 2q
30S ribosomal protein S17

Coloring options:


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