J4_6O9J_004
3D structure
- PDB id
- 6O9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Elongation Competent Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 6O9J|1|B|G|1271, 6O9J|1|B|A|1272, 6O9J|1|B|U|1273, 6O9J|1|B|A|1274, 6O9J|1|B|A|1275, 6O9J|1|B|C|1646, 6O9J|1|B|U|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6O9J_004 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.1643
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6O9J|1|B|C|1270
6O9J|1|B|G|1271
6O9J|1|B|A|1272
6O9J|1|B|U|1273
6O9J|1|B|A|1274
6O9J|1|B|A|1275
6O9J|1|B|A|1276
*
6O9J|1|B|U|1294
6O9J|1|B|C|1295
*
6O9J|1|B|G|1645
6O9J|1|B|C|1646
6O9J|1|B|U|1647
6O9J|1|B|U|1648
*
6O9J|1|B|A|2009
6O9J|1|B|G|2010
Current chains
- Chain B
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L32
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
Coloring options: