J4_6O9J_006

3D structure

PDB id

6O9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Elongation Competent Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6O9J|1|B|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O9J_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0879

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6O9J|1|B|U|1313
6O9J|1|B|C|1314
*
6O9J|1|B|G|1338
6O9J|1|B|G|1339
6O9J|1|B|U|1340
6O9J|1|B|G|1341
6O9J|1|B|A|1342
6O9J|1|B|G|1343
*
6O9J|1|B|C|1404
6O9J|1|B|U|1405
*
6O9J|1|B|A|1597
6O9J|1|B|A|1598
6O9J|1|B|U|1599
6O9J|1|B|C|1600
6O9J|1|B|G|1601
6O9J|1|B|U|1602
6O9J|1|B|A|1603

Current chains

Chain B

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23