J4_6O9J_012

3D structure

PDB id

6O9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Elongation Competent Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6O9J|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O9J_012 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.2646

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6O9J|1|a|G|115
6O9J|1|a|A|116
6O9J|1|a|G|117
6O9J|1|a|U|118
6O9J|1|a|A|119
6O9J|1|a|A|120
6O9J|1|a|U|121
6O9J|1|a|G|122
*
6O9J|1|a|U|239
6O9J|1|a|G|240
*
6O9J|1|a|C|286
6O9J|1|a|U|287
6O9J|1|a|A|288
6O9J|1|a|G|289
*
6O9J|1|a|C|311
6O9J|1|a|C|312

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17