J4_6O9K_001

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6O9K|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O9K_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1739

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6O9K|1|A|C|268
6O9K|1|A|C|269
*
6O9K|1|A|G|370
6O9K|1|A|A|371
6O9K|1|A|G|372
6O9K|1|A|U|373
6O9K|1|A|A|374
6O9K|1|A|G|375
*
6O9K|1|A|U|399
6O9K|1|A|G|400
6O9K|1|A|A|401
6O9K|1|A|A|402
6O9K|1|A|U|403
6O9K|1|A|A|404
6O9K|1|A|U|405
6O9K|1|A|G|406
*
6O9K|1|A|C|421
6O9K|1|A|A|422
6O9K|1|A|A|423
6O9K|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28