J4_6O9K_013

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6O9K|1|a|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O9K_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2054

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6O9K|1|a|G|142
6O9K|1|a|A|143
6O9K|1|a|G|144
*
6O9K|1|a|C|178
6O9K|1|a|A|179
6O9K|1|a|U|180
6O9K|1|a|A|181
6O9K|1|a|A|182
6O9K|1|a|C|183
6O9K|1|a|G|184
*
6O9K|1|a|C|193
6O9K|1|a|C|194
6O9K|1|a|A|195
6O9K|1|a|A|196
6O9K|1|a|A|197
6O9K|1|a|G|198
*
6O9K|1|a|U|219
6O9K|1|a|G|220
6O9K|1|a|C|221

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20