J4_6O9K_018
3D structure
- PDB id
- 6O9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUGG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6O9K|1|y|U|8, 6O9K|1|y|U|48, 6O9K|1|y|C|49
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6O9K_018 not in the Motif Atlas
- Homologous match to J4_4WT8_031
- Geometric discrepancy: 0.3436
- The information below is about J4_4WT8_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.26
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 56
Unit IDs
6O9K|1|y|G|7
6O9K|1|y|U|8
6O9K|1|y|G|9
6O9K|1|y|G|10
*
6O9K|1|y|C|26
6O9K|1|y|G|27
6O9K|1|y|U|28
*
6O9K|1|y|A|44
6O9K|1|y|A|45
6O9K|1|y|G|46
6O9K|1|y|A|47
6O9K|1|y|U|48
6O9K|1|y|C|49
6O9K|1|y|G|50
*
6O9K|1|y|C|66
6O9K|1|y|C|67
Current chains
- Chain y
- tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- 30S ribosomal protein S13
Coloring options: