J4_6OF1_001

3D structure

PDB id

6OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6OF1|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OF1_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0444

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6OF1|1|1A|C|268
6OF1|1|1A|U|269
*
6OF1|1|1A|G|370
6OF1|1|1A|A|371
6OF1|1|1A|G|372
6OF1|1|1A|U|373
6OF1|1|1A|A|374
6OF1|1|1A|C|375
*
6OF1|1|1A|G|399
6OF1|1|1A|G|400
6OF1|1|1A|A|401
6OF1|1|1A|A|402
6OF1|1|1A|U|403
6OF1|1|1A|C|404
6OF1|1|1A|U|405
6OF1|1|1A|G|406
*
6OF1|1|1A|U|421
6OF1|1|1A|A|422
6OF1|1|1A|A|423
6OF1|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9