J4_6OF1_027

3D structure

PDB id

6OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6OF1|1|2a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OF1_027 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0698

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6OF1|1|2a|G|115
6OF1|1|2a|A|116
6OF1|1|2a|G|117
6OF1|1|2a|U|118
6OF1|1|2a|A|119
6OF1|1|2a|A|120
6OF1|1|2a|C|121
6OF1|1|2a|G|122
*
6OF1|1|2a|U|239
6OF1|1|2a|C|240
*
6OF1|1|2a|G|286
6OF1|1|2a|U|287
6OF1|1|2a|A|288
6OF1|1|2a|G|289
*
6OF1|1|2a|C|311
6OF1|1|2a|C|312

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17