J4_6OF1_032
3D structure
- PDB id
- 6OF1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GAU(4SU)AG*CAC*GGG(7MG)UCG*CAUC
- Length
- 20 nucleotides
- Bulged bases
- 6OF1|1|2y|4SU|8, 6OF1|1|2y|U|47, 6OF1|1|2y|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OF1_032 not in the Motif Atlas
- Homologous match to J4_6GSK_031
- Geometric discrepancy: 0.5712
- The information below is about J4_6GSK_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_13620.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cHS-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6OF1|1|2y|G|5
6OF1|1|2y|A|6
6OF1|1|2y|U|7
6OF1|1|2y|4SU|8
6OF1|1|2y|A|9
6OF1|1|2y|G|10
*
6OF1|1|2y|C|25
6OF1|1|2y|A|26
6OF1|1|2y|C|27
*
6OF1|1|2y|G|43
6OF1|1|2y|G|44
6OF1|1|2y|G|45
6OF1|1|2y|7MG|46
6OF1|1|2y|U|47
6OF1|1|2y|C|48
6OF1|1|2y|G|49
*
6OF1|1|2y|C|65
6OF1|1|2y|A|66
6OF1|1|2y|U|67
6OF1|1|2y|C|68
Current chains
- Chain 2y
- A-site and E-site tRNAs
Nearby chains
- Chain 26
- 50S ribosomal protein L33
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2g
- 30S ribosomal protein S7
- Chain 2k
- 30S ribosomal protein S11
Coloring options: