J4_6OF6_001

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6OF6|1|QA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OF6_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0635

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6OF6|1|QA|G|115
6OF6|1|QA|A|116
6OF6|1|QA|G|117
6OF6|1|QA|U|118
6OF6|1|QA|A|119
6OF6|1|QA|A|120
6OF6|1|QA|C|121
6OF6|1|QA|G|122
*
6OF6|1|QA|U|239
6OF6|1|QA|C|240
*
6OF6|1|QA|G|286
6OF6|1|QA|U|287
6OF6|1|QA|A|288
6OF6|1|QA|G|289
*
6OF6|1|QA|C|311
6OF6|1|QA|C|312

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain QQ

30S ribosomal protein S17