J4_6OF6_006

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6OF6|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OF6_006 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0907

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6OF6|1|RA|C|268
6OF6|1|RA|U|269
*
6OF6|1|RA|G|370
6OF6|1|RA|A|371
6OF6|1|RA|G|372
6OF6|1|RA|U|373
6OF6|1|RA|A|374
6OF6|1|RA|C|375
*
6OF6|1|RA|G|399
6OF6|1|RA|G|400
6OF6|1|RA|A|401
6OF6|1|RA|A|402
6OF6|1|RA|U|403
6OF6|1|RA|C|404
6OF6|1|RA|U|405
6OF6|1|RA|G|406
*
6OF6|1|RA|U|421
6OF6|1|RA|A|422
6OF6|1|RA|A|423
6OF6|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9