J4_6OF6_010

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

6OF6|1|RA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OF6_010 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0849

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6OF6|1|RA|U|1313
6OF6|1|RA|C|1314
*
6OF6|1|RA|G|1338
6OF6|1|RA|G|1339
6OF6|1|RA|U|1340
6OF6|1|RA|U|1341
6OF6|1|RA|A|1342
6OF6|1|RA|G|1343
*
6OF6|1|RA|C|1404
6OF6|1|RA|U|1405
*
6OF6|1|RA|A|1597
6OF6|1|RA|C|1598
6OF6|1|RA|C|1599
6OF6|1|RA|C|1600
6OF6|1|RA|G|1601
6OF6|1|RA|U|1602
6OF6|1|RA|A|1603

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23