J4_6OFX_001

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6OFX|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OFX_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1414

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6OFX|1|1|C|268
6OFX|1|1|C|269
*
6OFX|1|1|G|370
6OFX|1|1|A|371
6OFX|1|1|G|372
6OFX|1|1|U|373
6OFX|1|1|A|374
6OFX|1|1|G|375
*
6OFX|1|1|U|399
6OFX|1|1|G|400
6OFX|1|1|A|401
6OFX|1|1|A|402
6OFX|1|1|U|403
6OFX|1|1|A|404
6OFX|1|1|U|405
6OFX|1|1|G|406
*
6OFX|1|1|C|421
6OFX|1|1|A|422
6OFX|1|1|A|423
6OFX|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28