J4_6OG7_001

3D structure

PDB id

6OG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6OG7|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OG7_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1469

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6OG7|1|1|C|268
6OG7|1|1|C|269
*
6OG7|1|1|G|370
6OG7|1|1|A|371
6OG7|1|1|G|372
6OG7|1|1|U|373
6OG7|1|1|A|374
6OG7|1|1|G|375
*
6OG7|1|1|U|399
6OG7|1|1|G|400
6OG7|1|1|A|401
6OG7|1|1|A|402
6OG7|1|1|U|403
6OG7|1|1|A|404
6OG7|1|1|U|405
6OG7|1|1|G|406
*
6OG7|1|1|C|421
6OG7|1|1|A|422
6OG7|1|1|A|423
6OG7|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28