J4_6OG7_005

3D structure

PDB id

6OG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6OG7|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OG7_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.1074

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6OG7|1|1|U|1313
6OG7|1|1|C|1314
*
6OG7|1|1|G|1338
6OG7|1|1|G|1339
6OG7|1|1|U|1340
6OG7|1|1|G|1341
6OG7|1|1|A|1342
6OG7|1|1|G|1343
*
6OG7|1|1|C|1404
6OG7|1|1|U|1405
*
6OG7|1|1|A|1597
6OG7|1|1|A|1598
6OG7|1|1|U|1599
6OG7|1|1|C|1600
6OG7|1|1|G|1601
6OG7|1|1|U|1602
6OG7|1|1|A|1603

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L23