3D structure

PDB id
6OG7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAG*CAUAACG*CCAAAG*UGC
Length
19 nucleotides
Bulged bases
6OG7|1|3|C|183, 6OG7|1|3|A|197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6OG7_012 not in the Motif Atlas
Homologous match to J4_5J7L_002
Geometric discrepancy: 0.1763
The information below is about J4_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_01665.1
Basepair signature
cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

6OG7|1|3|G|142
6OG7|1|3|A|143
6OG7|1|3|G|144
*
6OG7|1|3|C|178
6OG7|1|3|A|179
6OG7|1|3|U|180
6OG7|1|3|A|181
6OG7|1|3|A|182
6OG7|1|3|C|183
6OG7|1|3|G|184
*
6OG7|1|3|C|193
6OG7|1|3|C|194
6OG7|1|3|A|195
6OG7|1|3|A|196
6OG7|1|3|A|197
6OG7|1|3|G|198
*
6OG7|1|3|U|219
6OG7|1|3|G|220
6OG7|1|3|C|221

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain Y
30S ribosomal protein S20

Coloring options:


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