J4_6OGG_004

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6OGG|1|1|G|1341, 6OGG|1|1|A|1598

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OGG_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1498

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6OGG|1|1|G|1310
6OGG|1|1|G|1311
6OGG|1|1|U|1312
6OGG|1|1|U|1313
6OGG|1|1|C|1314
*
6OGG|1|1|G|1338
6OGG|1|1|G|1339
6OGG|1|1|U|1340
6OGG|1|1|G|1341
6OGG|1|1|A|1342
6OGG|1|1|G|1343
*
6OGG|1|1|C|1404
6OGG|1|1|U|1405
*
6OGG|1|1|A|1597
6OGG|1|1|A|1598
6OGG|1|1|U|1599
6OGG|1|1|C|1600
6OGG|1|1|G|1601
6OGG|1|1|U|1602
6OGG|1|1|A|1603
6OGG|1|1|C|1604

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain t

50S ribosomal protein L23