3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CUG*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
6OGG|1|1|U|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6OGG_008 not in the Motif Atlas
Homologous match to J4_5J7L_026
Geometric discrepancy: 0.2188
The information below is about J4_5J7L_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6OGG|1|1|C|1833
6OGG|1|1|U|1834
6OGG|1|1|G|1835
*
6OGG|1|1|C|1905
6OGG|1|1|G|1906
*
6OGG|1|1|C|1924
6OGG|1|1|C|1925
6OGG|1|1|U|1926
6OGG|1|1|A|1927
6OGG|1|1|A|1928
6OGG|1|1|G|1929
6OGG|1|1|G|1930
6OGG|1|1|U|1931
6OGG|1|1|A|1932
6OGG|1|1|G|1933
*
6OGG|1|1|C|1967
6OGG|1|1|G|1968
6OGG|1|1|A|1969
6OGG|1|1|A|1970
6OGG|1|1|U|1971
6OGG|1|1|G|1972

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 3
Small subunit ribosomal RNA; SSU rRNA
Chain 5
Transfer RNA; tRNA
Chain b
50S ribosomal protein L2

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