J4_6OGG_014
3D structure
- PDB id
- 6OGG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUGG*CGUC*GAAGGUCG*CC
- Length
- 18 nucleotides
- Bulged bases
- 6OGG|1|5|U|47, 6OGG|1|5|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OGG_014 not in the Motif Atlas
- Homologous match to J4_7E8O_001
- Geometric discrepancy: 0.4119
- The information below is about J4_7E8O_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OGG|1|5|G|7
6OGG|1|5|U|8
6OGG|1|5|G|9
6OGG|1|5|G|10
*
6OGG|1|5|C|25
6OGG|1|5|G|26
6OGG|1|5|U|27
6OGG|1|5|C|28
*
6OGG|1|5|G|42
6OGG|1|5|A|43
6OGG|1|5|A|44
6OGG|1|5|G|45
6OGG|1|5|G|46
6OGG|1|5|U|47
6OGG|1|5|C|48
6OGG|1|5|G|49
*
6OGG|1|5|C|65
6OGG|1|5|C|66
Current chains
- Chain 5
- tRNAfMet
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain R
- 30S ribosomal protein S13
- Chain e
- 50S ribosomal protein L5
Coloring options: