J4_6OGI_008

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6OGI|1|1|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OGI_008 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1706

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6OGI|1|1|C|1833
6OGI|1|1|U|1834
6OGI|1|1|G|1835
*
6OGI|1|1|C|1905
6OGI|1|1|G|1906
*
6OGI|1|1|C|1924
6OGI|1|1|C|1925
6OGI|1|1|U|1926
6OGI|1|1|A|1927
6OGI|1|1|A|1928
6OGI|1|1|G|1929
6OGI|1|1|G|1930
6OGI|1|1|U|1931
6OGI|1|1|A|1932
6OGI|1|1|G|1933
*
6OGI|1|1|C|1967
6OGI|1|1|G|1968
6OGI|1|1|A|1969
6OGI|1|1|A|1970
6OGI|1|1|U|1971
6OGI|1|1|G|1972

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2