J4_6OGI_011

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGUAAUG*UG*CUAGCU*AGCC

Length

20 nucleotides

Bulged bases

6OGI|1|3|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OGI|1|3|G|115
6OGI|1|3|A|116
6OGI|1|3|G|117
6OGI|1|3|U|118
6OGI|1|3|A|119
6OGI|1|3|A|120
6OGI|1|3|U|121
6OGI|1|3|G|122
*
6OGI|1|3|U|239
6OGI|1|3|G|240
*
6OGI|1|3|C|286
6OGI|1|3|U|287
6OGI|1|3|A|288
6OGI|1|3|G|289
6OGI|1|3|C|290
6OGI|1|3|U|291
*
6OGI|1|3|A|309
6OGI|1|3|G|310
6OGI|1|3|C|311
6OGI|1|3|C|312

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17